Tom Solmajer: search on Z-Library

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1

MurD ligase from E. coli: Tetrahedral intermediate formation study by hybrid quantum mechanical/molecular mechanical replica path method

Andrej Perdih, Milan Hodoscek, Tom Solmajer

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 436 KB

english, 2009

2

Binding free energy calculations ofN-sulphonyl-glutamic acid inhibitors of MurD ligase

Andrej Perdih, Urban Bren, Tom Solmajer

Journal:

Journal of Molecular Modeling

Year:

2009

Language:

english

File:

PDF, 454 KB

english, 2009

3

In Silico Discovery of a Substituted 6-Methoxy-quinalidine with Leishmanicidal Activity in Leishmania infantum

Stevanović, Strahinja, Perdih, Andrej, Senćanski, Milan, Glišić, Sanja, Duarte, Margarida, Tomás, Ana, Sena, Filipa, Sousa, Filipe, Pereira, Manuela, Solmajer, Tom

Journal:

Year:

2018

Language:

english

File:

PDF, 44.30 MB

english, 2018

4

Quantitative Structure-Activity Relationships of Streptococcus pneumoniae MurD Transition State Analogue Inhibitors

Miha Kotnik, Marko Oblak, Jan Humljan, Stanislav Gobec, Uros Urleb, Tom Solmajer

Journal:

Molecular Informatics

Year:

2004

Language:

english

File:

PDF, 278 KB

english, 2004

5

Monocyclic 4-amino-6-(phenylamino)-1,3,5-triazines as inhibitors of human DNA topoisomerase IIα

Pogorelčnik, Barbara, Brvar, Matjaž, Zajc, Irena, Filipič, Metka, Solmajer, Tom, Perdih, Andrej

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2014

Language:

english

File:

PDF, 2.23 MB

english, 2014

6

4,6-Substituted-1,3,5-triazin-2(1H)-ones as monocyclic catalytic inhibitors of human DNA topoisomerase IIα targeting the ATP binding site

Pogorelčnik, Barbara, Janežič, Matej, Sosič, Izidor, Gobec, Stanislav, Solmajer, Tom, Perdih, Andrej

Journal:

Bioorganic & Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 3.50 MB

english, 2015

7

Design, synthesis and bioactivity evaluation of tribactam β lactamase inhibitors

Anton Copar, Tadeja Prevec, Borut Anžič, Tomaž Mesar, Lovro Selič, Mateja Vilar, Tom Solmajer

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2002

Language:

english

File:

PDF, 144 KB

english, 2002

8

Design of biologically active, conformationally constrained GnRH antagonists

R. Scott Struthers, Genzo Tanaka, Steven C. Koerber, Tom Solmajer, Edmund L. Baniak, Lila M. Gierasch, Wylie Vale, Jean Rivier, Dr. Arnold T. Hagler

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1990

Language:

english

File:

PDF, 1.19 MB

english, 1990

9

Structure-Based Discovery of Substituted 4,5′-Bithiazoles as Novel DNA Gyrase Inhibitors

Brvar, Matjaž, Perdih, Andrej, Renko, Miha, Anderluh, Gregor, Turk, Dušan, Solmajer, Tom

Journal:

Journal of Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 4.10 MB

english, 2012

10

Discovery of novel benzene 1,3-dicarboxylic acid inhibitors of bacterial MurD and MurE ligases by structure-based virtual screening approach

Andrej Perdih, Andreja Kovač, Gerhard Wolber, Didier Blanot, Stanislav Gobec, Tom Solmajer

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2009

Language:

english

File:

PDF, 1.44 MB

english, 2009

11

Discovery of the first inhibitors of bacterial enzyme d-aspartate ligase from Enterococcus faecium (Aslfm)

Škedelj, Veronika, Perdih, Andrej, Brvar, Matjaž, Kroflič, Ana, Dubbée, Vincent, Savage, Victoria, O'Neill, Alex J., Solmajer, Tom, Bešter-Rogač, Marija, Blanot, Didier, Hugonnet, Jean-Emmanuel, Magne

Journal:

European Journal of Medicinal Chemistry

Year:

2013

Language:

english

File:

PDF, 2.58 MB

english, 2013

12

Structural and Functional Characterization of Enantiomeric Glutamic Acid Derivatives as Potential Transition State Analogue Inhibitors of MurD Ligase

Miha Kotnik, Jan Humljan, Carlos Contreras-Martel, Marko Oblak, Katja Kristan, Mireille Hervé, Didier Blanot, Uroš Urleb, Stanislav Gobec, Andréa Dessen, Tom Solmajer

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 963 KB

english, 2007

13

3-substituted-1 H -indazoles as Catalytic Inhibitors of the Human DNA Topoisomerase IIα

Janežič, Matej, Pogorelčnik, Barbara, Brvar, Matjaž, Solmajer, Tom, Perdih, Andrej

Journal:

ChemistrySelect

Year:

2017

Language:

english

File:

PDF, 3.20 MB

english, 2017

14

Spin-Labeled Alkylphospholipids in a Dipalmitoylphosphatidylcholine Bilayer: Molecular Dynamics Simulations

Mravljak, Janez, Konc, Janez, Hodošček, Milan, Šolmajer, Tom, Pečar, Slavko

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 170 KB

english, 2006

15

Discovery of Mono- and Disubstituted 1 H -Pyrazolo[3,4]pyrimidines and 9 H -Purines as Catalytic Inhibitors of Human DNA Topoisomerase IIα

Pogorelčnik, Barbara, Brvar, Matjaž, Žegura, Bojana, Filipič, Metka, Solmajer, Tom, Perdih, Andrej

Journal:

Year:

2015

Language:

english

File:

PDF, 2.45 MB

english, 2015

16

Interaction energies of ZnO in acrylic polymer lattices

Ursa Klun, Jure Zupan, Tom Solmajer

Journal:

Macromolecular Theory and Simulations

Year:

1999

Language:

english

File:

PDF, 135 KB

english, 1999

17

Investigation of 6-fluoroquinolones activity againstMycobacterium tuberculosisusing theoretical molecular descriptors: a case study

Nikola Minovski, Aneta Jezierska-Mazzarello, Marjan Vračko, Tom Šolmajer

Journal:

Central European Journal of Chemistry

Year:

2011

Language:

english

File:

PDF, 567 KB

english, 2011

18

The impact of Mycobacterium tuberculosis gyrB point mutations on 6-fluoroquinolones resistance profile: in silico mutagenesis and structure-based assessment

Minovski, Nikola, Novic, Marjana, Solmajer, Tom

Journal:

Year:

2015

Language:

english

File:

PDF, 2.18 MB

english, 2015

19

Quantitative Structure-Activity Relationship of Flavonoid Inhibitors of p56lck Protein Tyrosine Kinase: A Classical/Quantum Chemical Approach

Zaneta Nikolovska-Coleska, Ljubica Suturkova, Kiril Dorevski, Ales Krbavcic, Tom Solmajer

Journal:

Molecular Informatics

Year:

1998

Language:

english

File:

PDF, 143 KB

english, 1998

20

Thiol-reactive Clenbuterol Analogues Conjugated to Bovine Serum Albumin

Oblak, Marko, Preželj, Andrej, Pečar, Slavko, Solmajer, Tom

Journal:

Zeitschrift für Naturforschung C

Year:

2004

Language:

english

File:

PDF, 115 KB

english, 2004

21

Thrombin inhibitors with novel P1 binding pocket functionality: free energy of binding analysis

Gregor Mlinsek, Marko Oblak, Milan Hodoscek, Tom Solmajer

Journal:

Journal of Molecular Modeling

Year:

2007

Language:

english

File:

PDF, 252 KB

english, 2007

22

Structural Analysis of a Peptide Fragment of Transmembrane Transporter Protein Bilitranslocase

Perdih, Andrej, Roy Choudhury, Amrita, Župerl, Špela, Sikorska, Emilia, Zhukov, Igor, Solmajer, Tom, Novič, Marjana, Kobe, Bostjan

Journal:

Year:

2012

Language:

english

File:

PDF, 1.11 MB

english, 2012

23

Combinatorially-generated library of 6-fluoroquinolone analogs as potential novel antitubercular agents: a chemometric and molecular modeling assessment

Nikola Minovski, Andrej Perdih, Tom Solmajer

Journal:

Journal of Molecular Modeling

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

24

Study of the selectivity of α1-adrenergic antagonists by molecular modeling of α1a-, α1b-, and α1d-adrenergic receptor subtypes and docking simulations

Erić, Slavica, Šolmajer, Tom, Kotnik, Miha, Zloh, Mire, Agbaba, Danica

Journal:

Monatshefte für Chemie - Chemical Monthly

Year:

2013

Language:

english

File:

PDF, 604 KB

english, 2013

25

Molecular dynamics simulation and linear interaction energy study ofd-Glu-based inhibitors of the MurD ligase

Perdih, Andrej, Wolber, Gerhard, Solmajer, Tom

Journal:

Journal of Computer-Aided Molecular Design

Year:

2013

Language:

english

File:

PDF, 923 KB

english, 2013

26

Inhibitor Design Strategy Based on an Enzyme Structural Flexibility: A Case of Bacterial MurD Ligase

Perdih, Andrej, Hrast, Martina, Barreteau, Hélène, Gobec, Stanislav, Wolber, Gerhard, Solmajer, Tom

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 8.42 MB

english, 2014

27

Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurD

Andrej Perdih, Miha Kotnik, Milan Hodoscek, Tom Solmajer

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 722 KB

english, 2007

28

Discovery and Development of ATPase Inhibitors of DNA Gyrase as Antibacterial Agents

Marko Oblak, Bentham Science Publisher, Miha Kotnik, Bentham Science Publisher, Tom Solmajer, Bentham Science Publisher

Journal:

Current Medicinal Chemistry

Year:

2007

Language:

english

File:

PDF, 356 KB

english, 2007

29

In silico discovery and biophysical evaluation of novel 5-(2-hydroxybenzylidene) rhodanine inhibitors of DNA gyrase B

Matjaž Brvar, Andrej Perdih, Vesna Hodnik, Miha Renko, Gregor Anderluh, Roman Jerala, Tom Solmajer

Journal:

Bioorganic & Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 1005 KB

english, 2012

30

Furan-based benzene mono- and dicarboxylic acid derivatives as multiple inhibitors of the bacterial Mur ligases (MurC–MurF): experimental and computational characterization

Perdih, Andrej, Hrast, Martina, Pureber, Kaja, Barreteau, Hélène, Grdadolnik, Simona Golič, Kocjan, Darko, Gobec, Stanislav, Solmajer, Tom, Wolber, Gerhard

Journal:

Journal of Computer-Aided Molecular Design

Year:

2015

Language:

english

File:

PDF, 4.53 MB

english, 2015

31

Cluster-based molecular docking study for in silico identification of novel 6-fluoroquinolones as potential inhibitors against Mycobacterium tuberculosis

Minovski, Nikola, Perdih, Andrej, Novic, Marjana, Solmajer, Tom

Journal:

Journal of Computational Chemistry

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

32

ChemInform Abstract: Design, Synthesis and Bioactivity Evaluation of Tribactam β Lactamase Inhibitors (VIII).

Anton Copar, Tadeja Prevec, Borut Anzic, Tomaz Mesar, Lovro Selic, Mateja Vilar, Tom Solmajer

Journal:

Year:

2002

File:

PDF, 31 KB

2002

33

Quantitative structure–activity relationship study of antitubercular fluoroquinolones

Nikola Minovski, Marjan Vračko, Tom Šolmajer

Journal:

Molecular Diversity

Year:

2011

Language:

english

File:

PDF, 489 KB

english, 2011

34

MurD ligase from Escherichia coli: C-terminal domain closing motion

Andrej Perdih, Tom Solmajer

Journal:

Computational and Theoretical Chemistry

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

35

Structural elucidation of transmembrane transporter protein bilitranslocase: Conformational analysis of the second transmembrane region TM2 by molecular dynamics and NMR spectroscopy

Roy Choudhury, Amrita, Perdih, Andrej, Župerl, Špela, Sikorska, Emilia, Solmajer, Tom, Jurga, Stefan, Zhukov, Igor, Novič, Marjana

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

36

Biophysical characterization of an indolinone inhibitor in the ATP-binding site of DNA gyrase

Marko Oblak, Simona Golič Grdadolnik, Miha Kotnik, Arnaud Poterszman, R. Andrew Atkinson, Helene Nierengarten, Dominique Desplancq, Dino Moras, Tom Solmajer

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 766 KB

english, 2006

37

Benzene-1,3-dicarboxylic acid 2,5-dimethylpyrrole derivatives as multiple inhibitors of bacterial Mur ligases (MurC–MurF)

Perdih, Andrej, Hrast, Martina, Barreteau, Hélène, Gobec, Stanislav, Wolber, Gerhard, Solmajer, Tom

Journal:

Bioorganic & Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 3.55 MB

english, 2014

38

Optimization algorithms and natural computing in drug discovery

Tom Solmajer, Jure Zupan

Journal:

Drug Discovery Today: Technologies

Year:

2004

Language:

english

File:

PDF, 262 KB

english, 2004

39

N -Phenyl-4,5-dibromopyrrolamides and N -Phenylindolamides as ATP Competitive DNA Gyrase B Inhibitors: Design, Synthesis, and Evaluation

Zidar, Nace, Macut, Helena, Tomašič, Tihomir, Brvar, Matjaž, Montalvão, Sofia, Tammela, Päivi, Solmajer, Tom, Peterlin Mašič, Lucija, Ilaš, Janez, Kikelj, Danijel

Journal:

Journal of Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

40

Flavonoids and cinnamic acid esters as inhibitors of fungal 17β-hydroxysteroid dehydrogenase: A synthesis, QSAR and modelling study

Matej Sova, Andrej Perdih, Miha Kotnik, Katja Kristan, Tea Lanišnik Rižner, Tom Solmajer, Stanislav Gobec

Journal:

Bioorganic & Medicinal Chemistry

Year:

2006

Language:

english

File:

PDF, 651 KB

english, 2006

41

In silico discovery of 2-amino-4-(2,4-dihydroxyphenyl)thiazoles as novel inhibitors of DNA gyrase B

Matjaž Brvar, Andrej Perdih, Marko Oblak, Lucija Peterlin Mašič, Tom Solmajer

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2010

Language:

english

File:

PDF, 403 KB

english, 2010

42

Target fishing and docking studies of the novel derivatives of aryl-aminopyridines with potential anticancer activity

Slavica Erić, Song Ke, Teresa Barata, Tom Solmajer, Jelena Antić Stanković, Zorica Juranić, Vladimir Savić, Mire Zloh

Journal:

Bioorganic & Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 742 KB

english, 2012

43

Discovery of 4,5,6,7-Tetrahydrobenzo[1,2- d ]thiazoles as Novel DNA Gyrase Inhibitors Targeting the ATP-Binding Site

Tomašič, Tihomir, Katsamakas, Sotirios, Hodnik, Žiga, Ilaš, Janez, Brvar, Matjaž, Solmajer, Tom, Montalvão, Sofia, Tammela, Päivi, Banjanac, Mihailo, Ergović, Gabrijela, Anderluh, Marko, Mašič, Lucija

Journal:

Journal of Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

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